PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004912
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 271aa    MW: 29541 Da    PI: 5.242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004912genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1892141255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrd    g+r r +lg+++taeeAa  ++ a+ kl g
  Cla004912  92 KFRGVRRRP-WGKWAAEIRDS---GRRVRLWLGTYDTAEEAAMVYDSAAVKLQG 141
                89*******.**********3...356**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-2991150IPR001471AP2/ERF domain
CDDcd000181.22E-2692147No hitNo description
PfamPF008471.0E-1292141IPR001471AP2/ERF domain
SMARTSM003807.6E-3692155IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2192150IPR016177DNA-binding domain
PROSITE profilePS5103223.16992149IPR001471AP2/ERF domain
PRINTSPR003673.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEVPTIRCRK PISEPPGNFA GRSSTGSRIV RISMTDPDAT DSSSSDEDPV NFTRRRVKRY  60
EVEYTIGTAV DGSGGGARKL KRKRTAVGNV RKFRGVRRRP WGKWAAEIRD SGRRVRLWLG  120
TYDTAEEAAM VYDSAAVKLQ GPGALTNFPT HPPPPFTGEE PSSPTNISSP TSVLYRTQFT  180
ECSPSNRATA TGAVDESPVV DCPFSDDIFK SILLESPLLP EYQSTLIPET PWIGGGAGSG  240
EWAAVGGSDE RVEDHDYFEE ILMGSDPLVV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1791149160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1791149463ATERF1
3gcc_A2e-1791149463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17997LKRKRTAVGNVRKFRGVRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437573.11e-142PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE35e-41CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0A0KJI11e-140A0A0A0KJI1_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2449833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-31cytokinin response factor 2